pcif1 protein (Larimichthys crocea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

pcif1

PDX1 C-terminal inhibiting factor 1. (683 aa)

Predicted Functional Partners:

mettl14

0.477

mettl16

0.420

trmt112

0.404

mettl5

0.400

Your Current Organism:

Larimichthys crocea

NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
mettl14	mettl16	ENSLCRP00005022071	ENSLCRP00005004244	N6-adenosine-methyltransferase non-catalytic subunit.	U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase.	0.722
mettl14	mettl5	ENSLCRP00005022071	ENSLCRP00005031732	N6-adenosine-methyltransferase non-catalytic subunit.	Methyltransferase-like protein 5.	0.570
mettl14	pcif1	ENSLCRP00005022071	ENSLCRP00005002773	N6-adenosine-methyltransferase non-catalytic subunit.	PDX1 C-terminal inhibiting factor 1.	0.477
mettl16	mettl14	ENSLCRP00005004244	ENSLCRP00005022071	U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase.	N6-adenosine-methyltransferase non-catalytic subunit.	0.722
mettl16	mettl5	ENSLCRP00005004244	ENSLCRP00005031732	U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase.	Methyltransferase-like protein 5.	0.677
mettl16	pcif1	ENSLCRP00005004244	ENSLCRP00005002773	U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase.	PDX1 C-terminal inhibiting factor 1.	0.420
mettl5	mettl14	ENSLCRP00005031732	ENSLCRP00005022071	Methyltransferase-like protein 5.	N6-adenosine-methyltransferase non-catalytic subunit.	0.570
mettl5	mettl16	ENSLCRP00005031732	ENSLCRP00005004244	Methyltransferase-like protein 5.	U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase.	0.677
mettl5	pcif1	ENSLCRP00005031732	ENSLCRP00005002773	Methyltransferase-like protein 5.	PDX1 C-terminal inhibiting factor 1.	0.400
mettl5	trmt112	ENSLCRP00005031732	ENSLCRP00005051351	Methyltransferase-like protein 5.	Multifunctional methyltransferase subunit TRM112-like protein.	0.954
pcif1	mettl14	ENSLCRP00005002773	ENSLCRP00005022071	PDX1 C-terminal inhibiting factor 1.	N6-adenosine-methyltransferase non-catalytic subunit.	0.477
pcif1	mettl16	ENSLCRP00005002773	ENSLCRP00005004244	PDX1 C-terminal inhibiting factor 1.	U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase.	0.420
pcif1	mettl5	ENSLCRP00005002773	ENSLCRP00005031732	PDX1 C-terminal inhibiting factor 1.	Methyltransferase-like protein 5.	0.400
pcif1	trmt112	ENSLCRP00005002773	ENSLCRP00005051351	PDX1 C-terminal inhibiting factor 1.	Multifunctional methyltransferase subunit TRM112-like protein.	0.404
trmt112	mettl5	ENSLCRP00005051351	ENSLCRP00005031732	Multifunctional methyltransferase subunit TRM112-like protein.	Methyltransferase-like protein 5.	0.954
trmt112	pcif1	ENSLCRP00005051351	ENSLCRP00005002773	Multifunctional methyltransferase subunit TRM112-like protein.	PDX1 C-terminal inhibiting factor 1.	0.404