STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104928887Hydroperoxy icosatetraenoate dehydratase/isomerase. (341 aa)    
Predicted Functional Partners:
cotl1
Coactosin like F-actin binding protein 1.
    
 
 0.754
rnf215
RING finger protein 215 isoform X1.
      
 0.667
MAPKAPK2
Mitogen-activated protein kinase-activated protein kinase 2.
    
  0.555
LOC104927913
Mitogen-activated protein kinase-activated protein kinase 2.
    
  0.555
ints9
Integrator complex subunit 9.
    
 0.515
ints1
Integrator complex subunit 1 isoform X2.
    
 0.504
ints11
Integrator complex subunit 11.
    
 0.498
ints4
Integrator complex subunit 4.
    
 0.487
ints3
Integrator complex subunit 3.
    
 0.485
ints13
Integrator complex subunit 13 isoform X1.
    
 0.477
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.