STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
riox1Ribosomal oxygenase 1. (574 aa)    
Predicted Functional Partners:
RPL8
Large subunit ribosomal protein L8e.
    
 
 0.906
ENSLCRP00005029988
Ribosomal protein L8.
    
 
 0.906
skida1
SKI/DACH domain-containing protein 1.
      
 0.611
hspbap1
HSPB1-associated protein 1.
      
 0.588
jmjd4
JmjC domain-containing protein 4.
      
 0.588
kdm8
JmjC domain-containing protein 5 isoform X2.
      
 0.541
RPL27A
Large subunit ribosomal protein L27Ae.
    
 
 0.533
mrpl2
39S ribosomal protein L2, mitochondrial isoform X2.
    
 
 0.493
ENSLCRP00005064301
annotation not available
    
 
 0.493
usp7
Ubiquitin carboxyl-terminal hydrolase 7 isoform X1.
      
 0.491
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.