STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC109138236Histone H2B 1/2. (122 aa)    
Predicted Functional Partners:
LOC104934515
Histone H2AX.
 
 0.834
leo1
RNA polymerase-associated protein LEO1.
    
 0.819
LOC104923457
Histone H2A.V.
   
 0.692
LOC104927203
Histone H2A.Z.
   
 0.692
kdm6a
Lysine-specific demethylase 6A isoform X1.
    
 0.691
kdm6b
Lysine-specific demethylase 6B.
    
 0.691
LOC104920017
Uncharacterized protein LOC104920017 isoform X1.
    
 0.691
LOC104937847
Lysine-specific demethylase 6A isoform X1.
    
 0.691
LOC113744360
Histone H2A-like.
 
 0.682
LOC104921797
Histone H2A.
 
 0.682
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.