STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104935073HORMA domain-containing protein 1. (307 aa)    
Predicted Functional Partners:
rad51
DNA repair protein RAD51 homolog 1.
   
 
 0.643
trip13
Pachytene checkpoint protein 2 homolog.
   
 
 0.627
mnd1
Meiotic nuclear division protein 1 homolog.
    
 
 0.597
msh4
DNA mismatch repair protein MSH4.
   
  
 0.591
fancm
Fanconi anemia group M protein isoform X1.
      
 0.585
spo11
Meiotic recombination protein SPO11.
   
  
 0.580
smc3
Structural maintenance of chromosome 3 (chondroitin sulfate proteoglycan 6).
    
 
 0.580
LOC104924542
Synaptonemal complex central element protein 1.
      
 0.570
LOC104935484
DNA repair protein RAD51 homolog 3.
   
 
 0.559
knl1
Kinetochore scaffold 1.
   
 
 0.559
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.