STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104923045H-2 class II histocompatibility antigen, A-U alpha chain. (246 aa)    
Predicted Functional Partners:
LOC104923075
RLA class II histocompatibility antigen, DP alpha-1 chain-like.
  
 
0.989
cd74
HLA class II histocompatibility antigen gamma chain.
   
 0.707
rps14
Small subunit ribosomal protein S14e.
   
 0.707
LOC104923044
DLA class II histocompatibility antigen, DR-1 beta chain-like.
  
0.665
LOC109139426
Rano class II histocompatibility antigen, A beta chain.
 
0.651
ENSLCRP00005029672
annotation not available
   
  0.636
ENSLCRP00005003634
annotation not available
   
 0.618
ENSLCRP00005005641
Class II histocompatibility antigen, B-L beta chain.
   
 0.618
ENSLCRP00005006072
annotation not available
   
 0.618
mrps11
28S ribosomal protein S11, mitochondrial isoform X1.
   
 0.587
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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