STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
atat1Alpha-tubulin N-acetyltransferase 1 isoform X9. (448 aa)    
Predicted Functional Partners:
ttll5
Tubulin polyglutamylase TTLL5 isoform X4.
   
  
 0.583
sirt2
NAD+-dependent protein deacetylase sirtuin 2.
      
 0.580
cxih6orf58
Protein LEG1 homolog isoform X1.
      
 0.577
hdac6
Histone deacetylase 6.
   
  
 0.551
nanos3
Nanos homolog 3.
      
 0.523
msh5
MutS protein homolog 5 isoform X1.
      
 0.495
ENSLCRP00005043468
Synaptonemal complex central element protein 2.
      
 0.443
eef1aknmt
Methyltransferase-like protein 13.
      
 0.441
ttll12
Tubulin--tyrosine ligase-like protein 12.
      
 0.404
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.