STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104928639Pre-B-cell leukemia transcription factor 1. (414 aa)    
Predicted Functional Partners:
LOC104927188
Homeobox protein Hox-B7a.
    
 0.845
hoxb1
Homeobox protein HoxA/B/D1.
    
 0.785
LOC104927733
Homeobox protein HoxA/B/D1.
    
 0.692
meis1
Homeobox protein Meis1 isoform X1.
   
0.682
hoxc9
Homeobox protein HoxB/C/D9.
    
 
 0.676
gsx1
Homeobox protein GSH.
    
 0.674
pknox1
Homeobox protein PKNOX1 isoform X1.
   
0.669
hoxb8
Homeobox protein Hox-B8 isoform X1.
    
 0.611
hoxc8
Homeobox protein HoxB/C/D8.
    
 0.611
meis2
Homeobox protein Meis2 isoform X1.
   
0.610
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.