STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PSTKphosphoseryl-tRNA kinase. (384 aa)    
Predicted Functional Partners:
sepsecs
Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase.
      
 0.686
sars1
Serine--tRNA ligase, cytoplasmic.
      
 0.686
sars2
Serine--tRNA ligase, mitochondrial.
      
 0.683
LOC104934816
TRNA selenocysteine 1-associated protein 1-like isoform X1.
      
 0.602
scly
Selenocysteine lyase isoform X1.
      
 0.589
kti12
Protein KTI12 homolog.
      
 0.579
selenok
Selenoprotein K.
      
 0.574
ENSLCRP00005030758
annotation not available
      
 0.572
eefsec
Selenocysteine-specific elongation factor isoform X1.
      
 0.572
trnau1ap
TRNA selenocysteine 1-associated protein 1 isoform X2.
      
 0.544
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.