STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104921166Retinol dehydrogenase 8-like. (309 aa)    
Predicted Functional Partners:
LOC104918263
All-trans-retinol 3,4-desaturase.
   
 
 0.919
LOC104928862
Cytochrome P450 family 26 subfamily A.
   
 
 0.917
aox1
Aldehyde oxidase isoform X1.
   
 
 0.907
LOC104925853
Beta,beta-carotene 15,15'-dioxygenase.
   
 
 0.904
pnpla4
Patatin-like phospholipase domain-containing protein 4 isoform X3.
     
 0.900
aldh1a2
Retinal dehydrogenase 2.
  
 0.752
aldh1a3
Aldehyde dehydrogenase family 1 member A3.
  
 0.752
hsd17b12
17beta-estradiol 17-dehydrogenase / very-long-chain 3-oxoacyl-CoA reductase.
 
 0.722
retsat
All-trans-retinol 13,14-reductase.
  
 
 0.698
LOC104928682
All-trans-retinol 13,14-reductase-like.
  
 
 0.698
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.