STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ppil4Peptidyl-prolyl cis-trans isomerase-like 4 isoform X1. (492 aa)    
Predicted Functional Partners:
syf2
Pre-mRNA-splicing factor SYF2.
 
  
 0.898
ppwd1
Peptidylprolyl isomerase domain and WD repeat-containing protein 1.
  
0.870
cwc22
Pre-mRNA-splicing factor CWC22 homolog isoform X1.
   
 0.834
cdc40
Pre-mRNA-processing factor 17.
   
 0.789
sf3a1
Splicing factor 3A subunit 1 isoform X1.
   
 0.779
ppil1
Peptidyl-prolyl cis-trans isomerase-like 1.
  
  
0.770
nsrp1
Nuclear speckle splicing regulatory protein 1.
   
 0.761
dhx16
Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16.
   
 0.757
cwc25
Pre-mRNA-splicing factor CWC25 homolog.
   
 0.756
ppil3
Peptidyl-prolyl cis-trans isomerase-like 3.
  
 
0.741
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.