STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104928913Syntaxin 12/13. (268 aa)    
Predicted Functional Partners:
ykt6
Synaptobrevin homolog YKT6.
   
 0.967
vti1a
Vesicle transport through interaction with t-SNAREs homolog 1A isoform X2.
   
 0.952
LOC104936006
Vesicle-associated membrane protein 8.
   
 0.935
LOC104938129
Vesicle-associated membrane protein 8 isoform X1.
   
 0.924
vps16
Vacuolar protein sorting-associated protein 16 homolog.
    
 
 0.922
stx8
LOW QUALITY PROTEIN: syntaxin-8.
    
 0.916
vps18
Vacuolar protein sorting-associated protein 18 homolog.
    
 
 0.908
LOC104939014
Syntaxin 12/13.
  
  
 
0.901
vps11
Vacuolar protein sorting-associated protein 11 homolog.
   
 
 0.884
vps39
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39.
   
 
 0.868
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.