STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
p3h1Procollagen-proline 3-dioxygenase 1. (844 aa)    
Predicted Functional Partners:
ppib
Peptidyl-prolyl cis-trans isomerase B (cyclophilin B).
   
 0.793
crtap
Cartilage-associated protein.
   
0.680
LOC104940512
Serpin peptidase inhibitor, clade H, member 1.
   
 
 0.676
p3h4
Endoplasmic reticulum protein SC65.
   
0.671
P3H4
Endoplasmic reticulum protein SC65 isoform X2.
   
0.671
LOC104930320
Serpin peptidase inhibitor, clade H, member 1.
   
 
 0.650
ppic
Peptidyl-prolyl isomerase C (cyclophilin C).
   
 0.619
LOC104930981
Peptidyl-prolyl cis-trans isomerase FKBP10.
   
  
 0.604
ECM2
Extracellular matrix protein 2.
      
 0.602
serpinf1
Pigment epithelium-derived factor.
     
 0.587
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.