STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cntn5Contactin-5 isoform X1. (1171 aa)    
Predicted Functional Partners:
ptprg
Receptor-type tyrosine-protein phosphatase gamma.
    
 0.658
LOC104933232
Receptor-type tyrosine-protein phosphatase gamma isoform X1.
    
 0.658
LOC104932346
Amyloid-beta A4 protein isoform X1.
   
 
 0.553
APP
Amyloid-beta A4 protein isoform X1.
   
 
 0.553
chl1
Cell adhesion molecule L1 like.
    
0.528
l1cam
Neural cell adhesion molecule L1 isoform X1.
    
0.528
LOC104939324
Neurofascin.
    
0.528
LOC104933590
Neural cell adhesion molecule L1.1 isoform X1.
    
0.528
LOC104919452
Neural cell adhesion molecule L1-like protein isoform X1.
    
0.528
NRCAM
Neuronal cell adhesion molecule isoform X8.
    
0.528
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.