STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnf4E3 ubiquitin-protein ligase RNF4. (191 aa)    
Predicted Functional Partners:
rps27a
Ubiquitin-small subunit ribosomal protein S27Ae.
    
  0.914
ubb
Polyubiquitin-B isoform X1.
    
 0.913
ube2n
Ubiquitin-conjugating enzyme E2 N.
   
 0.911
LOC104932591
Ubiquitin-conjugating enzyme E2 N isoform X2.
   
 0.911
LOC104940446
KxDL motif-containing protein 1.
    
   0.851
LOC104935852
Ubiquitin-large subunit ribosomal protein L40e.
    
  0.811
LOC104920976
Ubiquitin-large subunit ribosomal protein L40e.
    
  0.811
sumo1
Small ubiquitin like modifier 1.
   
 
 0.750
ENSLCRP00005042778
annotation not available
   
 
 0.750
ube2v2
Ubiquitin-conjugating enzyme E2 variant 2.
    
 0.727
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.