LOC104935772 protein (Larimichthys crocea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC104935772

RNA/RNP complex-1-interacting phosphatase. (361 aa)

Predicted Functional Partners:

supt5h

0.876

rnmt

0.775

Ncbp2

0.746

polr2c

0.730

polr2g

0.693

polr2d

0.687

NCBP1

0.687

mnat1

0.645

polr2i

0.633

polr1c

0.622

Your Current Organism:

Larimichthys crocea

NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC104935772	NCBP1	ENSLCRP00005010305	ENSLCRP00005053339	RNA/RNP complex-1-interacting phosphatase.	Nuclear cap-binding protein subunit 1.	0.687
LOC104935772	Ncbp2	ENSLCRP00005010305	ENSLCRP00005005548	RNA/RNP complex-1-interacting phosphatase.	Nuclear cap-binding protein subunit 2.	0.746
LOC104935772	mnat1	ENSLCRP00005010305	ENSLCRP00005034285	RNA/RNP complex-1-interacting phosphatase.	CDK-activating kinase assembly factor MAT1.	0.645
LOC104935772	polr1c	ENSLCRP00005010305	ENSLCRP00005035061	RNA/RNP complex-1-interacting phosphatase.	DNA-directed RNA polymerases I and III subunit RPAC1.	0.622
LOC104935772	polr2c	ENSLCRP00005010305	ENSLCRP00005032738	RNA/RNP complex-1-interacting phosphatase.	DNA-directed RNA polymerase II subunit RPB3.	0.730
LOC104935772	polr2d	ENSLCRP00005010305	ENSLCRP00005008485	RNA/RNP complex-1-interacting phosphatase.	DNA-directed RNA polymerase II subunit RPB4.	0.687
LOC104935772	polr2g	ENSLCRP00005010305	ENSLCRP00005012782	RNA/RNP complex-1-interacting phosphatase.	DNA-directed RNA polymerase II subunit RPB7.	0.693
LOC104935772	polr2i	ENSLCRP00005010305	ENSLCRP00005024685	RNA/RNP complex-1-interacting phosphatase.	DNA-directed RNA polymerase II subunit RPB9 isoform X1.	0.633
LOC104935772	rnmt	ENSLCRP00005010305	ENSLCRP00005022811	RNA/RNP complex-1-interacting phosphatase.	MRNA cap guanine-N7 methyltransferase.	0.775
LOC104935772	supt5h	ENSLCRP00005010305	ENSLCRP00005023667	RNA/RNP complex-1-interacting phosphatase.	Transcription elongation factor SPT5 isoform X1.	0.876
NCBP1	LOC104935772	ENSLCRP00005053339	ENSLCRP00005010305	Nuclear cap-binding protein subunit 1.	RNA/RNP complex-1-interacting phosphatase.	0.687
NCBP1	Ncbp2	ENSLCRP00005053339	ENSLCRP00005005548	Nuclear cap-binding protein subunit 1.	Nuclear cap-binding protein subunit 2.	0.999
NCBP1	polr1c	ENSLCRP00005053339	ENSLCRP00005035061	Nuclear cap-binding protein subunit 1.	DNA-directed RNA polymerases I and III subunit RPAC1.	0.664
NCBP1	polr2c	ENSLCRP00005053339	ENSLCRP00005032738	Nuclear cap-binding protein subunit 1.	DNA-directed RNA polymerase II subunit RPB3.	0.734
NCBP1	polr2i	ENSLCRP00005053339	ENSLCRP00005024685	Nuclear cap-binding protein subunit 1.	DNA-directed RNA polymerase II subunit RPB9 isoform X1.	0.661
NCBP1	rnmt	ENSLCRP00005053339	ENSLCRP00005022811	Nuclear cap-binding protein subunit 1.	MRNA cap guanine-N7 methyltransferase.	0.776
NCBP1	supt5h	ENSLCRP00005053339	ENSLCRP00005023667	Nuclear cap-binding protein subunit 1.	Transcription elongation factor SPT5 isoform X1.	0.772
Ncbp2	LOC104935772	ENSLCRP00005005548	ENSLCRP00005010305	Nuclear cap-binding protein subunit 2.	RNA/RNP complex-1-interacting phosphatase.	0.746
Ncbp2	NCBP1	ENSLCRP00005005548	ENSLCRP00005053339	Nuclear cap-binding protein subunit 2.	Nuclear cap-binding protein subunit 1.	0.999
Ncbp2	polr1c	ENSLCRP00005005548	ENSLCRP00005035061	Nuclear cap-binding protein subunit 2.	DNA-directed RNA polymerases I and III subunit RPAC1.	0.693