STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
calhm2Calcium homeostasis modulator protein 2. (321 aa)    
Predicted Functional Partners:
cxiiih1orf109
Uncharacterized protein C1orf109 homolog isoform X1.
   
    0.772
rubcnl
Rubicon like autophagy enhancer.
   
    0.689
cwc25
Pre-mRNA-splicing factor CWC25 homolog.
   
    0.672
fbxo47
F-box only protein 47.
   
    0.630
lix1
Protein limb expression 1 homolog.
   
    0.612
LIX1L
LIX1-like protein.
   
    0.612
acot11
Acyl-coenzyme A thioesterase 11 isoform X1.
   
    0.611
ACOT11
Acyl-coenzyme A thioesterase 11.
   
    0.611
mocs3
Adenylyltransferase and sulfurtransferase MOCS3.
   
    0.596
nt5dc1
5'-nucleotidase domain-containing protein 1 isoform X1.
      
 0.595
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.