STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104927959Kelch repeat and BTB domain-containing protein 5/10. (612 aa)    
Predicted Functional Partners:
bbs1
Bardet-Biedl syndrome 1 protein isoform X3.
    
 0.869
bbs9
Bardet-Biedl syndrome 9 protein.
   
 0.866
bbs4
Bardet-Biedl syndrome 4 protein.
    
 0.858
bbs7
Bardet-Biedl syndrome 7 protein.
   
 0.850
bbs2
Bardet-Biedl syndrome 2 protein.
    
 0.845
ttc8
Tetratricopeptide repeat protein 8.
   
 0.841
lztfl1
Leucine zipper transcription factor like 1.
   
 0.662
rbx1
E3 ubiquitin-protein ligase RBX1.
    
 0.549
klhl31
Kelch-like protein 31 isoform X1.
  
 
0.494
CUL3
Cullin 3.
    
 0.493
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.