STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
jmjd6Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6. (402 aa)    
Predicted Functional Partners:
kdm8
JmjC domain-containing protein 5 isoform X2.
      
 0.599
gulp1
PTB domain-containing engulfment adapter protein 1 isoform X1.
      
 0.575
LOC104933358
Bromodomain-containing protein 4 isoform X1.
    
 
 0.555
LOC104928643
Bromodomain-containing protein 2 isoform X1.
    
 
 0.555
brd3
Bromodomain-containing protein 3 isoform X1.
    
 
 0.555
LOC104921727
Bromodomain testis-specific protein isoform X1.
    
 
 0.555
LOC104933389
Bromodomain-containing protein 3 isoform X1.
    
 
 0.555
LOC104924864
Bromodomain-containing protein 3-like.
    
 
 0.555
LOC104918570
Bromodomain-containing protein 4 isoform X1.
    
 
 0.555
ENSLCRP00005035475
Si:ch211-212d10.2.
    
 
 0.538
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.