STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104939476BCL-6 corepressor. (2252 aa)    
Predicted Functional Partners:
skp1
S-phase kinase-associated protein 1.
   
 0.637
pcgf6
Polycomb group RING finger protein 6.
    
 0.636
pcgf1
Polycomb group RING finger protein 1 isoform X1.
    
 0.636
bcl6b
B-cell CLL/lymphoma 6 member B protein.
    
 0.620
bcl6
B-cell lymphoma 6 protein.
    
 0.620
LOC109138540
B-cell lymphoma 6 protein homolog.
    
 0.620
mllt3
YEATS domain-containing protein 1/3.
    
 
 0.608
mllt1
YEATS domain-containing protein 1/3.
    
 
 0.608
ift81
Intraflagellar transport protein 81 homolog.
    
 0.479
rnf2
E3 ubiquitin-protein ligase RING2 isoform X2.
    
 0.466
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.