STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pepdXaa-Pro dipeptidase. (503 aa)    
Predicted Functional Partners:
LOC104938759
Uncharacterized protein LOC104938759.
    
  0.634
mipep
Mitochondrial intermediate peptidase.
   
 
 0.583
LOC104920219
Beta-citrylglutamate/N-acetylaspartylglutamate synthase.
     
 0.577
sucla2
succinate-CoA ligase ADP-forming beta subunit.
  
 
 0.565
ercc2
General transcription and DNA repair factor IIH helicase subunit XPD.
   
  
 0.553
rplp0
60S acidic ribosomal protein P0 isoform X1.
    
 
 0.510
sardh
Sarcosine dehydrogenase, mitochondrial isoform X1.
  
 0.509
dmgdh
Dimethylglycine dehydrogenase, mitochondrial.
  
 0.509
pdpr
Pyruvate dehydrogenase phosphatase regulatory subunit, mitochondrial.
  
 0.509
amt
Aminomethyltransferase, mitochondrial.
  
 0.509
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.