STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cirbpCold inducible RNA binding protein. (180 aa)    
Predicted Functional Partners:
hnrnpk
Heterogeneous nuclear ribonucleoprotein K isoform X1.
   
 0.717
LOC104922479
LOW QUALITY PROTEIN: heterogeneous nuclear ribonucleoprotein K.
   
 0.717
LOC104924616
Serine/arginine-rich splicing factor 9.
  
 0.677
Ncbp2
Nuclear cap-binding protein subunit 2.
  
0.628
fau
Ubiquitin-like protein fubi and ribosomal protein S30.
   
 0.611
PABPN1L
Embryonic polyadenylate-binding protein 2-B.
  
 0.601
NCBP1
Nuclear cap-binding protein subunit 1.
   
 0.587
jarid2
Protein Jumonji.
    
 
 0.579
hspa5
Endoplasmic reticulum chaperone BiP.
   
 0.578
LOC109136851
RNA binding protein fox-1 homolog 1-like isoform X1.
  
 
 
 0.566
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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