STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fundc1FUN14 domain containing 1. (173 aa)    
Predicted Functional Partners:
LOC104938582
Microtubule-associated proteins 1A/1B light chain 3B.
    
 0.875
pgam5
Serine/threonine-protein phosphatase PGAM5, mitochondrial isoform X1.
     
 0.758
atg12
Ubiquitin-like protein ATG12.
     
 0.647
atg5
Autophagy-related protein 5.
     
 0.644
gabarap
Gamma-aminobutyric acid receptor-associated protein.
   
 0.613
LOC104933813
Gamma-aminobutyric acid receptor-associated protein-like 2.
   
 0.613
GABARAPL2
GABA type A receptor associated protein like 2.
   
 0.595
LOC104933467
Serine/threonine-protein kinase ULK1 isoform X1.
    
 0.577
LOC104920108
Serine/threonine-protein kinase ULK1 isoform X1.
    
 0.577
ulk2
Serine/threonine-protein kinase ULK2.
    
 0.577
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.