STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
apaf1Apoptotic protease-activating factor 1 isoform X2. (1299 aa)    
Predicted Functional Partners:
LOC104940584
Cytochrome c-a.
   
 0.999
LOC104934161
Cytochrome c.
   
 0.999
LOC104924425
Cytochrome c.
   
 0.999
leo1
RNA polymerase-associated protein LEO1.
   
 0.993
casp9
Caspase 9.
    
 0.993
LOC113747505
Uncharacterized protein LOC113747505.
   
 0.990
aven
Cell death regulator Aven.
    
 0.981
apip
Methylthioribulose-1-phosphate dehydratase.
    
 0.978
birc6
Baculoviral IAP repeat-containing protein 6 isoform X1.
   
 0.977
casp2
Caspase 2.
    
 0.862
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.