STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
asb6Ankyrin repeat and SOCS box protein 6. (438 aa)    
Predicted Functional Partners:
rnf41
E3 ubiquitin-protein ligase NRDP1.
   
 0.834
CUL5
Cullin-5 isoform X1.
    
 0.795
LOC113746029
Cullin-5-like isoform X1.
    
 0.795
rnf7
RING-box protein 2.
    
 0.760
LOC104929723
Ankyrin repeat and SOCS box protein 7.
    
 0.722
asb1
Ankyrin repeat and SOCS box protein 1.
    
 0.711
commd8
COMM domain-containing protein 8.
   
  0.635
asb12
Ankyrin repeat and SOCS box containing 12.
  
  
 0.630
commd1
COMM domain-containing protein 1 isoform X1.
    
  0.627
LOC104924328
COMM domain-containing protein 4.
    
 0.624
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.