STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rps4x40S ribosomal protein S4, X isoform. (267 aa)    
Predicted Functional Partners:
LOC104924229
Large subunit ribosomal protein L26e.
  
 0.999
rpl6
Large subunit ribosomal protein L6e.
  
 0.999
rpl37
Ribosomal protein L37.
  
 
 0.999
rpl11
Large subunit ribosomal protein L11e.
  
 
 0.999
rps18
Ribosomal protein S18.
  
 0.999
RPS29
Small subunit ribosomal protein S29e.
  
 0.999
rps12
Small subunit ribosomal protein S12e.
   
 0.999
LOC104937790
60S ribosomal protein L12 isoform X1.
   
 
 0.999
LOC104939845
Small subunit ribosomal protein S17e.
   
 0.999
fau
Ubiquitin-like protein fubi and ribosomal protein S30.
   
 0.999
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.