STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UBA3NEDD8-activating enzyme E1 catalytic subunit. (475 aa)    
Predicted Functional Partners:
nae1
Amyloid beta precursor protein binding protein 1.
   
0.989
trip12
E3 ubiquitin-protein ligase TRIP12 isoform X1.
    
 0.982
LOC104919927
Ubiquitin-conjugating enzyme E2 variant 1-like isoform X2.
   
 
 0.958
birc6
Baculoviral IAP repeat-containing protein 6 isoform X1.
  
 0.957
LOC104932910
NEDD8.
   
 0.921
LOC104931181
Ubiquitin-like protein Nedd8.
   
 0.921
ube2f
Ubiquitin-conjugating enzyme E2 F.
    
 0.918
ube2m
Ubiquitin conjugating enzyme E2 M.
    
 0.918
cul1
Cullin-1 isoform X1.
   
 0.834
rbx1
E3 ubiquitin-protein ligase RBX1.
   
 0.823
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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