STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sf3b4Splicing factor 3B subunit 4. (398 aa)    
Predicted Functional Partners:
sf3b5
Splicing factor 3B subunit 5.
   
 0.999
phf5a
PHD finger-like domain-containing protein 5A.
    
 0.999
sf3b1
Splicing factor 3B subunit 1 isoform X1.
    
 0.999
sf3b2
Splicing factor 3b subunit 2.
   
 0.999
sf3b3
Splicing factor 3B subunit 3.
   
 0.999
sf3a2
Splicing factor 3A subunit 2.
   
 0.998
sf3a1
Splicing factor 3A subunit 1 isoform X1.
   
 0.998
sf3a3
Splicing factor 3A subunit 3.
    
 0.998
ddx42
ATP-dependent RNA helicase DDX42 isoform X1.
    
 0.996
sf3b6
Splicing factor 3b subunit 6.
    
 0.996
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.