STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ist1Vacuolar protein sorting-associated protein IST1. (348 aa)    
Predicted Functional Partners:
vta1
Vacuolar protein sorting-associated protein VTA1 homolog isoform X1.
   
 
 0.935
chmp2a
Charged multivesicular body protein 2A.
    
 0.918
chmp3
Charged multivesicular body protein 3.
    
 0.908
LOC104919108
Vacuolar protein sorting-associated protein 4B.
   
 0.880
VPS4B
Vacuolar protein sorting-associated protein 4B isoform X1.
   
 0.880
vps4a
Vacuolar protein sorting-associated protein 4A.
   
 0.880
chmp7
Charged multivesicular body protein 7.
    
 0.846
chmp5
Charged multivesicular body protein 5.
    
 
 0.821
LOC104925293
Charged multivesicular body protein 5.
    
 
 0.821
LOC104920599
Charged multivesicular body protein 1b-2.
    
 
 0.812
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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