STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSLCRP00005018509Collagen, type XI, alpha 2. (1266 aa)    
Predicted Functional Partners:
ccm2l
CCM2 like scaffold protein.
    
 0.548
LOC104938333
Glucocorticoid receptor.
    
 
 0.530
NR3C1
LOW QUALITY PROTEIN: glucocorticoid receptor.
    
 
 0.530
LOC104919371
Vitamin D 25-hydroxylase.
    
 
 0.530
CYP8B1
5-beta-cholestane-3-alpha,7-alpha-diol 12-alpha-hydroxylase.
    
 
 0.528
fgf1
Fibroblast growth factor 1 isoform X1.
    
 0.527
Col4a5
Collagen alpha-5(IV) chain isoform X3.
 
 
 
0.524
PPARA
Peroxisome proliferator-activated receptor alpha.
    
 
 0.458
ppara
Peroxisome proliferator-activated receptor alpha.
    
 
 0.458
tep1
Telomerase protein component 1.
    
 0.402
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.