STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sin3aLOW QUALITY PROTEIN: paired amphipathic helix protein Sin3a. (1272 aa)    
Predicted Functional Partners:
arid4b
AT-rich interactive domain-containing protein 4B isoform X1.
    
 0.922
arid4a
AT-rich interactive domain-containing protein 4A.
    
 0.922
suds3
Sin3 histone deacetylase corepressor complex component SDS3 isoform X1.
   
 0.919
phf12
PHD finger protein 12 isoform X1.
   
 
 0.902
ncor2
Nuclear receptor corepressor 2 isoform X1.
   
 0.858
sap30l
Histone deacetylase complex subunit SAP30L.
    
 0.843
LOC104935479
Bromodomain-containing protein 4.
    
 0.831
ing1
Inhibitor of growth protein 1.
   
 
 0.821
LOC104920778
Probable histone deacetylase 1-B.
   
 0.810
HDAC1
Probable histone deacetylase 1-B isoform X2.
   
 0.810
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.