STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gtf2h5TFIIH basal transcription factor complex TTD-A subunit. (71 aa)    
Predicted Functional Partners:
gtf2h4
Transcription initiation factor TFIIH subunit 4.
    
 0.998
ercc3
General transcription and DNA repair factor IIH helicase subunit XPB.
   
 0.998
gtf2h1
Transcription initiation factor TFIIH subunit 1.
    
 0.984
gtf2h3
General transcription factor IIH subunit 3.
    
 0.983
ercc2
General transcription and DNA repair factor IIH helicase subunit XPD.
    
 0.982
ccnh
Cyclin H.
    
 0.974
LOC104926566
General transcription factor IIH subunit 2-like isoform X1.
    
 0.972
gtf2e1
Transcription initiation factor TFIIE subunit alpha.
   
 0.941
mnat1
CDK-activating kinase assembly factor MAT1.
    
 0.937
gtf2f1
Transcription initiation factor TFIIF subunit alpha.
    
 0.932
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.