STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LRPPRCLeucine-rich PPR motif-containing protein, mitochondrial. (1438 aa)    
Predicted Functional Partners:
slirp
SRA stem-loop-interacting RNA-binding protein, mitochondrial.
   
 
 0.925
ptcd3
Pentatricopeptide repeat domain-containing protein 3, mitochondrial.
   
  
 0.704
eprs1
Bifunctional glutamate/proline--tRNA ligase isoform X1.
   
 
 0.684
gfm1
Elongation factor G, mitochondrial.
   
  
 0.657
mrps22
28S ribosomal protein S22, mitochondrial.
   
  
 0.610
LOC104935466
Translational activator of cytochrome c oxidase 1.
      
 0.604
ENSLCRP00005045682
annotation not available
      
 0.582
mtpap
Poly(A) RNA polymerase, mitochondrial isoform X2.
      
 0.574
polrmt
DNA-directed RNA polymerase, mitochondrial.
      
 0.572
nars2
Probable asparagine--tRNA ligase, mitochondrial.
   
  
 0.545
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.