STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
macrod2O-acetyl-ADP-ribose deacetylase MACROD2 isoform X4. (416 aa)    
Predicted Functional Partners:
akt1s1
Proline-rich AKT1 substrate 1.
   
    0.564
LOC104930857
E3 ubiquitin-protein ligase DTX3L-like isoform X1.
   
 0.434
LOC104932913
Probable E3 ubiquitin-protein ligase DTX3 isoform X1.
   
 0.434
adprhl2
Poly(ADP-ribose) glycohydrolase ARH3.
      
 0.432
parp1
Poly [ADP-ribose] polymerase 1.
    
 
 0.426
Aplf
Aprataxin and PNK-like factor.
    
 
 0.414
oard1
O-acetyl-ADP-ribose deacetylase 1.
    
 
 0.407
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.