STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rxraRetinoic acid receptor RXR-alpha isoform X1. (504 aa)    
Predicted Functional Partners:
nr1h3
Oxysterols receptor LXR-alpha.
   
0.920
ncor2
Nuclear receptor corepressor 2 isoform X1.
    
 0.877
PPARA
Peroxisome proliferator-activated receptor alpha.
    
0.828
LOC104919508
Bile acid receptor isoform X1.
   
0.815
nr1h4
Bile acid receptor isoform X1.
   
0.815
PPARG
Peroxisome proliferator-activated receptor gamma.
    
0.798
med1
Mediator of RNA polymerase II transcription subunit 1.
    
 0.781
ncoa1
Nuclear receptor coactivator 1.
   
 0.756
ppard
Peroxisome proliferator-activated receptor delta.
    
0.753
ppara
Peroxisome proliferator-activated receptor alpha.
    
0.737
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.