STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ppm1kProtein phosphatase 1K, mitochondrial. (382 aa)    
Predicted Functional Partners:
bckdhb
2-oxoisovalerate dehydrogenase subunit beta, mitochondrial.
   
 0.834
bckdha
2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial.
   
 0.785
dbt
2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase).
   
 0.783
dld
Dihydrolipoyl dehydrogenase, mitochondrial.
   
 0.520
LOC104919927
Ubiquitin-conjugating enzyme E2 variant 1-like isoform X2.
     
 0.512
mtfmt
Methionyl-tRNA formyltransferase, mitochondrial.
  
   0.489
AANAT
Arylalkylamine N-acetyltransferase.
    
   0.487
LOC104918698
Arylalkylamine N-acetyltransferase.
    
   0.487
LOC104938975
Arylalkylamine N-acetyltransferase.
    
   0.487
med31
Mediator of RNA polymerase II transcription subunit 31.
    
   0.471
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.