STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104924864Bromodomain-containing protein 3-like. (586 aa)    
Predicted Functional Partners:
taf7l
Transcription initiation factor TFIID subunit 7-like.
    
 
 0.674
dmap1
DNA methyltransferase 1-associated protein 1.
    
 
 0.596
e2f1
Transcription factor E2F1.
    
 
 0.587
nsd3
Histone-lysine N-methyltransferase NSD3 isoform X1.
   
 
 0.558
jmjd6
Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6.
    
 
 0.555
cdk9
Cyclin-dependent kinase 9.
   
 
 0.520
LOC104919740
Transcription initiation factor TFIID subunit 1 isoform X1.
    
 
0.510
ruvbl1
RuvB-like protein 1 (pontin 52).
 
  
 
 0.489
yeats4
YEATS domain-containing protein 4.
    
 
 0.468
crbn
Protein cereblon.
    
 
 0.463
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.