STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rundc1RUN domain containing 1. (611 aa)    
Predicted Functional Partners:
LOC104923258
Putative protein PTGES3L isoform X1.
      
 0.693
vps51
Vacuolar protein sorting-associated protein 51 homolog.
   
  
 0.614
ccdc186
Coiled-coil domain-containing protein 186 isoform X1.
      
 0.602
vps53
Vacuolar protein sorting-associated protein 53 homolog.
      
 0.577
tmf1
TATA element modulatory factor.
      
 0.521
vps54
Vacuolar protein sorting-associated protein 54 isoform X2.
      
 0.521
eipr1
EARP complex and GARP complex interacting protein 1.
      
 0.505
vps50
Syndetin.
      
 0.453
GCC2
GRIP and coiled-coil domain-containing protein 2.
      
 0.438
UNC79
Protein unc-79 homolog isoform X8.
      
 0.422
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.