STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NDE1Nuclear distribution protein nudE homolog 1 isoform X1. (345 aa)    
Predicted Functional Partners:
nudc
Nuclear migration protein nudC.
     
 0.721
LOC104935453
Platelet-activating factor acetylhydrolase IB subunit alpha.
    
 
 0.691
LOC104934416
Platelet-activating factor acetylhydrolase IB subunit alpha.
    
 
 0.691
zhx2
TBC1 domain family member 31.
    
 
 0.638
disc1
Disrupted in schizophrenia 1 protein isoform X1.
    
 
 0.592
nudcd3
NudC domain-containing protein 3.
     
 0.577
nudcd2
NudC domain-containing protein 2.
     
 0.577
cdc20
Cell division cycle 20, cofactor of APC complex.
     
 0.569
bub3
Mitotic checkpoint protein BUB3.
     
 0.558
mad2l1
Mitotic spindle assembly checkpoint protein MAD2A.
     
 0.500
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.