STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tbc1d9TBC1 domain family member 8/9. (1289 aa)    
Predicted Functional Partners:
gak
Cyclin-G-associated kinase isoform X1.
   
 
  0.945
dnajc6
DnaJ heat shock protein family (Hsp40) member C6.
   
 
  0.639
ap5m1
AP-5 complex subunit mu-1.
     
 0.536
LOC104938358
AP-1 complex subunit beta-1 isoform X1.
   
 
  0.482
ap1b1
AP-1 complex subunit beta-1 isoform X3.
   
 
  0.482
vegfc
Vascular endothelial growth factor C isoform X1.
   
  
 0.481
ENSLCRP00005041423
Yip1 domain family, member 6.
   
 
  0.472
hip1r
Huntingtin-interacting protein 1-related protein.
   
 
  0.470
hip1
Huntingtin-interacting protein 1 isoform X1.
   
 
  0.470
snapin
SNARE-associated protein Snapin.
     
 0.462
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.