STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
snip1Smad nuclear-interacting protein 1. (368 aa)    
Predicted Functional Partners:
rbmx2
RNA-binding motif protein, X-linked 2.
   
 0.998
snrnp200
U5 small nuclear ribonucleoprotein 200 kDa helicase.
   
 
 0.991
bud13
BUD13 homolog.
   
 0.990
snw1
SNW domain containing 1.
    
 
 0.988
Ak8
Adenylate kinase 8.
   
 0.974
sf3b1
Splicing factor 3B subunit 1 isoform X1.
    
 
 0.962
phf5a
PHD finger-like domain-containing protein 5A.
    
 
 0.943
cwc22
Pre-mRNA-splicing factor CWC22 homolog isoform X1.
   
 
 0.940
sf3a3
Splicing factor 3A subunit 3.
   
 
 0.928
rnf113a
E3 ubiquitin-protein ligase RNF113A.
   
 
 0.920
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.