STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC109141957Runt-related transcription factor 3 isoform X1. (332 aa)    
Predicted Functional Partners:
mysm1
Histone H2A deubiquitinase MYSM1.
    
  0.944
cbfb
Core-binding factor subunit beta isoform X1.
    
 0.924
yap1
Transcriptional coactivator YAP1.
    
 0.689
LOC104935674
Protein c-ets-1-B.
   
 0.649
ets1
Protein C-ets-1 isoform X3.
   
 0.649
LOC113747277
Protein c-ets-1-B-like isoform X1.
   
 0.649
LOC109141681
Transforming growth factor beta-1 proprotein.
   
 
 0.634
LOC104919929
CCAAT/enhancer binding protein (C/EBP), beta.
    
 0.605
LOC104939432
Endothelial transcription factor GATA-2.
    
 0.592
tp53
Cellular tumor antigen p53.
    
 0.578
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.