STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
egfl6Epidermal growth factor-like protein 6 isoform X1. (538 aa)    
Predicted Functional Partners:
wdr90
WD repeat domain 90.
   
 0.722
wdr24
WD repeat-containing protein 24.
      
 0.702
rhbdl1
Rhomboid-related protein 1 isoform X1.
    
 
 0.659
anks3
Ankyrin repeat and SAM domain-containing protein 3.
   
 0.656
ARHGAP6-2
Rho GTPase-activating protein 6.
    
 
 0.646
rhot2
Ras homolog family member T2.
    
 0.641
cog3
Conserved oligomeric Golgi complex subunit 3.
      
 0.628
ARHGAP6
Rho GTPase-activating protein 6 isoform X1.
    
 
 0.621
med14
Mediator of RNA polymerase II transcription subunit 14 isoform X1.
    
 
 0.573
LOC104928720
Protocadherin-8-like.
   
 0.569
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.