STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ASTE1Protein asteroid homolog 1. (730 aa)    
Predicted Functional Partners:
fancm
Fanconi anemia group M protein isoform X1.
    
 0.591
pold2
DNA polymerase delta subunit 2.
    
 0.586
mus81
Crossover junction endonuclease MUS81.
    
 0.556
pold1
DNA polymerase delta catalytic subunit.
   
 0.544
tubgcp2
Gamma-tubulin complex component 2.
      
 0.540
snrpd2
Small nuclear ribonucleoprotein Sm D2.
    
 0.517
snrpe
Small nuclear ribonucleoprotein polypeptide E.
   
 0.510
ddx20
Probable ATP-dependent RNA helicase DDX20.
   
 0.499
LOC104939431
Survival motor neuron protein.
    
 0.487
LOC104922807
Survival motor neuron protein 1.
    
 0.487
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.