STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
smcr8Guanine nucleotide exchange protein SMCR8. (941 aa)    
Predicted Functional Partners:
c9orf72
Guanine nucleotide exchange C9orf72 homolog.
    
 0.986
wdr41
WD repeat-containing protein 41.
    
 0.976
LOC104933467
Serine/threonine-protein kinase ULK1 isoform X1.
    
 0.920
LOC104920108
Serine/threonine-protein kinase ULK1 isoform X1.
    
 0.920
rab8a
RAB8A, member RAS oncogene family.
    
 0.918
ulk2
Serine/threonine-protein kinase ULK2.
    
 0.918
tank
TRAF family member-associated NF-kappa-B activator.
     
 0.911
LOC104921180
Guanine nucleotide exchange protein smcr8a.
  
  
 
0.908
RAB39B
Ras-related protein Rab-39B.
    
 0.905
LOC104935762
G2/mitotic-specific cyclin-B2 isoform X1.
    
 
 0.519
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.