STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRKCBProtein kinase C beta. (688 aa)    
Predicted Functional Partners:
pick1
PRKCA-binding protein.
    
 0.599
card11
Caspase recruitment domain-containing protein 11.
    
 0.597
ncf1
Neutrophil cytosolic factor 1.
   
 0.571
rasa1
Ras GTPase-activating protein 1.
    
 0.545
marcks
Myristoylated alanine-rich C-kinase substrate.
    
 0.528
LOC104936604
ELAV-like protein 1 isoform X1.
    
 0.525
LOC104939201
ELAV-like protein 1 isoform X1.
    
 0.525
stxbp3
Syntaxin-binding protein 3.
    
 0.515
LOC104935050
Leukotriene-B(4) omega-hydroxylase 2-like.
      
 0.505
pdpk1
3-phosphoinositide-dependent protein kinase 1 isoform X2.
    
0.504
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.