STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mak16Protein MAK16 homolog. (306 aa)    
Predicted Functional Partners:
rpf1
Ribosome production factor 1.
   
 
 0.998
wdr74
Ribosome biogenesis protein NSA1.
   
 
 0.996
rrp1b
Ribosomal RNA processing protein 1 homolog B isoform X1.
   
 
 0.994
nifk
MKI67 FHA domain-interacting nucleolar phosphoprotein.
   
 
 0.993
gtpbp4
Nucleolar GTP-binding protein 1.
   
 
 0.992
wdr12
Ribosome biogenesis protein WDR12.
   
 
 0.991
rsl24d1
Probable ribosome biogenesis protein RLP24.
   
   0.989
noc3l
Nucleolar complex protein 3 homolog isoform X1.
   
 
 0.988
ebna1bp2
Probable rRNA-processing protein EBP2.
   
 
 0.988
rsl1d1
Ribosomal L1 domain-containing protein 1.
   
 
 0.987
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.