STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104919579Syntaphilin isoform X1. (894 aa)    
Predicted Functional Partners:
trak1
Trafficking kinesin protein 1.
      
 0.608
myo19
Unconventional myosin-XIX.
   
  
 0.553
pink1
Serine/threonine-protein kinase PINK1, mitochondrial.
      
 0.520
MYO6
Unconventional myosin-VI.
      
 0.518
LOC104926270
Protein spire homolog 1 isoform X1.
      
 0.517
LOC104923109
Protein spire homolog 1 isoform X1.
      
 0.517
spire2
Protein spire homolog 2.
      
 0.517
ENSLCRP00005003879
Parkin RBR E3 ubiquitin protein ligase.
      
 0.516
prkn
E3 ubiquitin-protein ligase parkin.
      
 0.516
cplx4
Complexin-3/4.
      
 0.456
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.