STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mdn1Midasin. (5468 aa)    
Predicted Functional Partners:
nle1
Notchless protein homolog 1.
   
 
 0.971
wdr12
Ribosome biogenesis protein WDR12.
   
 0.957
gnl2
Nucleolar GTP-binding protein 2.
   
 
 0.945
sdad1
Protein SDA1 homolog.
   
 
 0.921
wdr18
WD repeat-containing protein 18 isoform X1.
   
 0.908
tex10
Pre-rRNA-processing protein IPI1.
    
 
 0.903
gtpbp4
Nucleolar GTP-binding protein 1.
   
 
 0.898
utp20
Small subunit processome component 20 homolog isoform X1.
   
  
 0.848
znf593
Bud site selection protein 20.
   
 
 0.832
rsl24d1
Probable ribosome biogenesis protein RLP24.
   
 
 0.812
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.