STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbm27RNA-binding protein 27 isoform X1. (1064 aa)    
Predicted Functional Partners:
ZFC3H1
Zinc finger C3H1 domain-containing protein.
   
 
 0.722
PABPN1L
Embryonic polyadenylate-binding protein 2-B.
    
 
 0.574
pabpn1
Polyadenylate-binding protein 2 isoform X4.
    
 
 0.574
mtrex
ATP-dependent RNA helicase DOB1.
   
 
 0.531
LOC104924145
RNA-binding protein with serine-rich domain 1-B.
    
 
 0.462
rnps1
RNA-binding protein with serine-rich domain 1.
    
 
 0.462
skiv2l
Helicase SKI2W isoform X2.
   
 
 0.459
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.